Balázs Szappanos Publications

HCEMM-BRC Metabolic Systems Biology Research Group

Balázs Szappanos Publications

16. High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds

Zampieri, M.*, Szappanos, B.*, Maria Virginia Buchieri, Trauner, A., Piazza, I., Picotti, P., Gagneux, S., Borrell, S., Gicquel, B., Lelievre, J., Balazs Papp, Uwe Sauer
Science Translational Medicine 21 Feb 2018: Vol. 10, Issue 429, eaal3973 doi:10.1126/scitranslmed.aal3973

15. Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal.

Fritzemeier, C.J., Hartleb, D., Szappanos, B., Papp, B., Lercher, M.J.
PLOS Computational Biology

14. Adaptive evolution of complex innovations through stepwise metabolic niche expansion

Szappanos B.*, Fritzemeier, J.*, Csörgő, B., Lázár, V., Xiaowen Lu,, Fekete, G., Bálint, B., Herczeg, R., Nagy, I., Notebaart, R A., Lercher, M J., Pál, C., Papp, B.
Nature Communications 7: 11607

13. Indispensability of horizontally transferred genes and its impact on bacterial genome streamlining.

Karcagi, I., Draskovits, G., Umenhoffer, K., Fekete, G., Kovács, K., Méhi, O., Balikó, G, Szappanos, B., Györfy, Z., Fehér, T, Bogos, B., Blattner, F.R., Pál, C., Pósfai, G., Papp, B.
Mol Biol Evol 33: 1257-1269.

12. Network-level architecture and the evolutionary potential of underground metabolism.

Notebaart, RA*, Szappanos, B*, Kintses, B*, Pál, F, Györkei, Á, Bogos, B, Lázár, V, Spohn, R, Csörgő, B, Wagner, A, Ruppin, E, Pál, C, Papp, B
PNAS 111: 11762–11767

11. Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network.

Lázár, V, Nagy, I, Spohn, R, Csörgő, B, Györkei, A, Nyerges, Á, Horváth, B, Vörös, A, Busa-Fekete, R, Hrtyan, M, Bogos, B, Méhi, O, Fekete, G, Szappanos, B, Kégl, B, Papp, B, Pál, C
Nature Communications 5: 4352

10. Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

Benjamin VanderSluis, David C Hess, Colin Pesyna, Elias W Krumholz, Tahin Syed, Balázs Szappanos, Corey Nislow, Balázs Papp, Olga G Troyanskaya, Chad L Myers, Amy A Caudy
Genome Biology 2014, 15:R64

9. Bacterial evolution of antibiotic hypersensitivity

Lázár, V, Singh, G P, Spohn, R, Nagy, I, Horváth, B, Hrtyan, M, Busa-Fekete, R, Bogos, B, Méhi, O, Csörgő, B, Pósfai, G, Fekete, G, Szappanos, B, Kégl, B, Papp, B, Pál, C
Molecular Systems Biology 9:700

8. ModuLand Plug-in for Cytoscape: Determination of Hierarchical Layers of Overlapping Network Modules and Community Centrality.

Szalay-Bekő, M., Palotai, R., Szappanos, B., Kovács, I.A., Papp, B., Csermely, P.
Bioinformatics 28: 2202

7. The Evolution of Defense Mechanisms Correlate with the Explosive Diversification of Autodigesting Coprinellus Mushrooms (Agaricales, Fungi).

Nagy, LG, Házi, J, Szappanos, B, Kocsubé, S, Bálint, B, Rákhely, G, Vágvölgyi, C, Papp, T.
Syst Biol. 61, 595–607.

6. Marked genetic differences between BRAF and NRAS mutated primary melanomas as revealed by array comparative genomic hybridization.

Lázár, V, Ecsedi, S, Vízkeleti, L, Rákosy, Z, Boross, G, Szappanos, B, Bégány, A, Emri, G, Adány, R, Balázs, M.
Melanoma Res. 22, 202–214.

5. Use of genome-scale metabolic models in evolutionary systems biology.

Papp, B., Szappanos, B., Notebaart, R.A.
Methods Mol. Biol. 759: 483.

4. An integrated approach to characterize genetic interaction networks in yeast metabolism.

Szappanos, B.*, Kovács, K.*, Szamecz, B., Honti, F., Costanzo, M., Baryshnikova, A., Gelius-Dietrich, G., Lercher, M.J., Jelasity, M., Myers, C.L., Andrews, B.J., Boone, C., Oliver, S.G., Pál, C., Papp, B.
Nature Genetics 43: 656

3. Reconciling the lock-and-key and dynamic views of canonical serine protease inhibitor action.

Gáspári, Z, Várnai, P, Szappanos, B, Perczel, A.
FEBS Lett. 584, 203-206.

2. Folded-unfolded cross-predictions and protein evolution: the case study of coiled-coils.

Szappanos, B, Süveges, D, Nyitray, L, Perczel, A, Gáspári, Z.
FEBS Lett. 584, 1623-1627.

1. CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data.

Angyán, AF, Szappanos, B, Perczel, A, Gáspári, Z.
BMC Struct Biol. 10, 39.

HCEMM-BRC Metabolic Systems Biology Research Group