Cancer Genomics and Epigenetics Core Group

Publications

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6. Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities

Parth Desai, Nobuyuki Takahashi, Rajesh Kumar, Samantha Nichols, Justin Malin, Allison Hunt, Christopher Schultz, Yingying Cao, Desiree Tillo, Darryl Nousome, Lakshya Chauhan, Linda Sciuto, Kimberly Jordan, Vinodh Rajapakse, Mayank Tandon, Delphine Lissa, Yang Zhang, Suresh Kumar, Lorinc Pongor, Abhay Singh, Brett Schroder, Ajit Kumar Sharma, Tiangen Chang, Rasa Vilimas, Danielle Pinkiert, Chante Graham, Donna Butcher, Andrew Warner, Robin Sebastian, Mimi Mahon, Karen Baker, Jennifer Cheng, Ann Berger, Ross Lake, Melissa Abel, Manan Krishnamurthy, George Chrisafis, Peter Fitzgerald, Micheal Nirula, Shubhank Goyal, Devon Atkinson, Nicholas W. Bateman, Tamara Abulez, Govind Nair, Andrea Apolo, Udayan Guha, Baktiar Karim, Rajaa El Meskini, Zoe Weaver Ohler, Mohit Kumar Jolly, Alejandro Schaffer, Eytan Ruppin, David Kleiner, Markku Miettinen, G. Tom Brown, Stephen Hewitt, Thomas Conrads, Anish Thomas
Journal/Proc./Book: Cell Reports Medicine
Year: 2024
Thematic Pillar: Genomic Instability and Cancer

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5. CDK-independent role of D-type cyclins in regulating DNA mismatch repair.

Rona, G., Miwatani-Minter, B., Zhang, Q., Goldberg, H. V., Kerzhnerman, M. A., Howard, J. B., Simoneschi, D., Lane, E., Hobbs, J. W., Sassani, E., Wang, A. A., Keegan, S., Laverty, D. J., Piett, C. G., Pongor, L. S., Xu, M. L., Andrade, J., Thomas, A., Sicinski, P., Askenazi, M., … Pagano, M.
Journal/Proc./Book: Molecular cell
Year: 2024
Thematic Pillar: Genomic Instability and Cancer

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4. Sarcoma_CellminerCDB: A tool to interrogate the genomic and functional characteristics of a comprehensive collection of sarcoma cell lines.

Tlemsani, C., Heske, C. M., Elloumi, F., Pongor, L., Khandagale, P., Varma, S., Meltzer, P. S., Khan, J., Reinhold, Wi. C., Pommier, Y.
Journal/Proc./Book: iScience
Year: 2024
Thematic Pillar: Genomic Instability and Cancer

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3. Applied models and molecular characteristics of small cell lung cancer. Pathology and Oncology Research

Fűr, G. M., Nemes, K., Magó, É., Benő, A. Á., Topolcsányi, P., Moldvay, J., Pongor, L. S.
Journal/Proc./Book: Pathology and Oncology Research
Year: 2024
Thematic Pillar: Genomic Instability and Cancer

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2. Predicting drug response of small cell lung cancer cell lines based on enrichment analysis of complex gene signatures.

Nemes, K., Benő, A., Topolcsányi, P., Magó, É., Fűr, G. M., Welsh, J. A., Goberdhan, D. C. I., O’Driscoll, L., Buzas, E. I., Blenkiron, C., Bussolati, B., Cai, H., Di Vizio, D., Driedonks, T. A. P., Erdbrügger, U., Falcon-Perez, J. M., Fu, Q. L., Hill, A. F., Lenassi, M., Lim, S. K., Mahoney, M. G., Mohanty, S., Möller, A., Nieuwland, R., Ochiya, T., … Witwer, K. W. Pongor, L. Ő. S.
Journal/Proc./Book: Journal of biotechnology
Year: 2024
Thematic Pillar: Genomic Instability and Cancer

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1. Extrachromosomal DNA Amplification Contributes to Small Cell Lung Cancer Heterogeneity and Is Associated with Worse Outcomes

Pongor LS, Schultz CW, Rinaldi L, Wangsa D, Redon CE, Takahashi N, Fialkoff G, Desai P, Zhang Y, Burkett S, Hermoni N, Vilk N, Gutin J, Gergely R, Zhao Y, Nichols S, Vilimas R, Sciuto L, Graham C, Caravaca JM, Turan S, Tsai-Wei S, Rajapakse VN, Kumar R, Upadhyay D, Kumar S, Kim YS, Roper N, Tran B, Hewitt SM, Kleiner DE, Aladjem MI, Friedman N, Hager GL, Pommier Y, Ried T, Thomas A.
Journal/Proc./Book: Cancer Discov.
Year: 2023
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